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    LOC4343837 protein LONGIFOLIA 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343837, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343837
    Gene description
    protein LONGIFOLIA 1
    Locus tag
    OSNPB_070603300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GL7
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    Genomic context

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    See LOC4343837 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (24889190..24894190, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (24664276..24669347, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene nuclear transport factor 2 Neighboring gene U3 small nucleolar RNA-associated protein 18 homolog Neighboring gene uncharacterized LOC9271653 Neighboring gene uncharacterized LOC136357476 Neighboring gene putative methylesterase 11, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Copy number variation at the GL7 locus contributes to grain size diversity in rice. Wang Y, et al. Nat Genet, 2015 Aug. PMID 26147619
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of monopolar cell growth IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein LONGIFOLIA 1
    Names
    OSJNBb0018H10.29
    OSJNBb0039M16.19
    Os07g0603300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      24889190..24894190 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791791.3 → XP_015647277.1  protein LONGIFOLIA 1

      UniProtKB/TrEMBL
      A0A0P0X8U0, Q0D4U7, Q69LS5, Q6YW00
      Conserved Domains (1) summary
      pfam14309
      Location:740 → 913
      DUF4378; Domain of unknown function (DUF4378)
    Nucleotide Protein
    Heading Accession and Version

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