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    LOC4352474 uncharacterized LOC4352474 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352474, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4352474
    Gene description
    uncharacterized LOC4352474
    Locus tag
    OSNPB_120552800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 32.8), flowers (RPKM 27.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 12
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (23153744..23156659)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (22466236..22469294)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene protein DETOXIFICATION 55 Neighboring gene F-box/LRR-repeat protein 3 Neighboring gene disease resistance protein RGA5-like Neighboring gene disease resistance protein RGA5-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4352474
    Names
    Os12g0552800

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      23153744..23156659
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762736.3 → XP_015618222.1  uncharacterized protein LOC4352474 isoform X2

      UniProtKB/TrEMBL
      A3CIA8, Q0IMR1, Q2QNU8
      Conserved Domains (1) summary
      PRK10811
      Location:278 → 401
      rne; ribonuclease E; Reviewed

    2. XM_015762735.3 → XP_015618221.1  uncharacterized protein LOC4352474 isoform X1

      UniProtKB/TrEMBL
      A3CIA8
      Conserved Domains (1) summary
      PRK10811
      Location:294 → 417
      rne; ribonuclease E; Reviewed
    Nucleotide Protein
    Heading Accession and Version

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