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    LOC4327565 L-2-hydroxyglutarate dehydrogenase, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327565, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4327565
    Gene description
    L-2-hydroxyglutarate dehydrogenase, mitochondrial
    Locus tag
    OSNPB_010809900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4327565 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (35013272..35016168)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (34406251..34409191)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat protein 1-like Neighboring gene uncharacterized LOC107281852 Neighboring gene probable U3 small nucleolar RNA-associated protein 11 Neighboring gene Ribonuclease III domain-containing protein RNC1, chloroplastic Neighboring gene uncharacterized LOC4327350

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 2-hydroxyglutarate dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    L-2-hydroxyglutarate dehydrogenase, mitochondrial
    Names
    Os01g0809900
    P0468B07.31
    dehydrogenase-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      35013272..35016168
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793353.3 → XP_015648839.1  L-2-hydroxyglutarate dehydrogenase, mitochondrial

      UniProtKB/TrEMBL
      B8AB82, B9ETT5, Q0JID5, Q5VQP1
      Conserved Domains (1) summary
      COG0579
      Location:44 → 414
      LhgO; L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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