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    LOC4328910 spermine synthase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328910, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4328910
    Gene description
    spermine synthase
    Locus tag
    OSNPB_020254700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    spdSyn3
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 65.9), flower buds (RPKM 65.8) and 6 other tissues See more
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    Genomic context

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    See LOC4328910 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (8752258..8756251, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (8726614..8730662, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107277501 Neighboring gene uncharacterized LOC136355461 Neighboring gene uncharacterized LOC9269211 Neighboring gene uncharacterized LOC136355104 Neighboring gene cyclic nucleotide-gated ion channel 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Spermine Synthase OsSPMS1 Regulates Seed Germination, Grain Size, and Yield. Tao Y, et al. Plant Physiol, 2018 Dec. PMID 30190417, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    spermine synthase
    Names
    OSJNBa0052K15.8-1
    Os02g0254700
    P0463G12.43-1
    putative aminopropyl transferase
    spermidine synthase 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      8752258..8756251 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771883.2 → XP_015627369.1  spermine synthase

      UniProtKB/TrEMBL
      B3GPG7, Q6EN48, Q6ET01
      Conserved Domains (1) summary
      PLN02366
      Location:48 → 368
      PLN02366; spermidine synthase

    RNA

    1. XR_010739390.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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