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    LOC4330451 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330451, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330451
    Gene description
    9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like
    Locus tag
    OSNPB_020704000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    NCED1
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    Genomic context

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    See LOC4330451 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (29516115..29518273, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (29026095..29028254, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4330449 Neighboring gene WAT1-related protein At5g45370 Neighboring gene DNA polymerase alpha-associated DNA helicase A Neighboring gene lipid phosphate phosphatase epsilon 2, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. Moriguchi K, et al. Plant Cell, 2005 Feb. PMID 15659629, Free PMC Article
    2. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carotenoid dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carotene catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast stroma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like
    Names
    9-cis-epoxycarotenoid dioxygenase 1
    Os02g0704000
    P0724B10.24
    neoxanthin cleavage enzyme-like protein
    putative 9-cis-epoxycarotenoid dioxygenase
    zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      29516115..29518273 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771176.3 → XP_015626662.1  9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like

      UniProtKB/Swiss-Prot
      Q6YVJ0, Q7XXP8
      UniProtKB/TrEMBL
      A0A172MA97, A3AAI1
      Conserved Domains (1) summary
      cl10080
      Location:144 → 636
      RPE65; Retinal pigment epithelial membrane protein
    Nucleotide Protein
    Heading Accession and Version

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