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    LOC4327105 E3 ubiquitin-protein ligase hel2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327105, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327105
    Gene description
    E3 ubiquitin-protein ligase hel2
    Locus tag
    OSNPB_010251200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 9.3), leaves after flowering (RPKM 9.0) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (8309392..8314214)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (8297578..8302460)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic Neighboring gene large ribosomal subunit protein uL3m Neighboring gene MFS18 protein Neighboring gene shaggy-related protein kinase alpha

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ribosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rescue of stalled ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase hel2
    Names
    Os01g0251200
    P0434D08.22-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      8309392..8314214
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755397.3 → XP_015610883.1  E3 ubiquitin-protein ligase hel2

      UniProtKB/TrEMBL
      A0A0P0V0F5, A0A9K3Y7H8, B8ABS4, Q0JP14, Q5NBD4
      Conserved Domains (1) summary
      COG5236
      Location:67 → 355
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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