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    LOC4342317 pathogenesis-related protein PRB1-3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342317, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342317
    Gene description
    pathogenesis-related protein PRB1-3
    Locus tag
    OSNPB_070129200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Pr1a; PR-1a
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    Genomic context

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    See LOC4342317 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (1522942..1523845)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (1512014..1512952)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene pathogenesis-related protein PRB1-2 Neighboring gene uncharacterized LOC136357319 Neighboring gene pathogenesis-related protein 1 Neighboring gene pathogenesis-related protein 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel rice (Oryza sativa L.) acidic PR1 gene highly responsive to cut, phytohormones, and protein phosphatase inhibitors. Agrawal GK, et al. Biochem Biophys Res Commun, 2000 Jul 21. PMID 10903912
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pathogenesis-related protein PRB1-3
    Names
    B1249D05.41
    OSJNBa0088O14.7
    Os07g0129200
    PR-1 type pathogenesis-related protein PR-1a
    acidic PR-1 type pathogenesis-related protein PR-1a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      1522942..1523845
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789648.3 → XP_015645134.1  pathogenesis-related protein PRB1-3

      UniProtKB/TrEMBL
      A0N0C1, Q6YSF8, Q7FP72, Q9FE57
      Conserved Domains (1) summary
      cd05381
      Location:28 → 168
      CAP_PR-1; CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain of pathogenesis-related protein 1 (PR-1) family proteins
    Nucleotide Protein
    Heading Accession and Version

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