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    LOC4349298 tetratricopeptide repeat protein SKI3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349298, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4349298
    Gene description
    tetratricopeptide repeat protein SKI3
    Locus tag
    OSNPB_100548100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4349298 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (22138385..22145919, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (21444267..21453623, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene short-chain dehydrogenase TIC 32, chloroplastic Neighboring gene uncharacterized LOC136353650 Neighboring gene U-box domain-containing protein 70-like Neighboring gene mediator of RNA polymerase II transcription subunit 32

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Ski complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tetratricopeptide repeat protein SKI3
    Names
    Os10g0548100
    Os10g0548200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      22138385..22145919 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759053.3 → XP_015614539.2  tetratricopeptide repeat protein SKI3 isoform X1

      UniProtKB/TrEMBL
      B9G6V6, Q336U8, Q94LU2

    2. XM_066304737.1 → XP_066160834.1  tetratricopeptide repeat protein SKI3 isoform X2

      UniProtKB/TrEMBL
      Q94LU2
    Nucleotide Protein
    Heading Accession and Version

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