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    LOC4326176 nuclear pore complex protein NUP85 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326176, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326176
    Gene description
    nuclear pore complex protein NUP85
    Locus tag
    OSNPB_010746200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4326176 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (31803159..31810958)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (31203450..31211275)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4326173 Neighboring gene GATA transcription factor 12 Neighboring gene uncharacterized LOC136355491 Neighboring gene carotenoid cleavage dioxygenase 8 homolog B, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear pore outer ring IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear pore complex protein NUP85
    Names
    OSJNBa0014K08.33-1
    OSJNBa0014K08.33-2
    Os01g0746200
    putative nucleoporin Nup75

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      31803159..31810958
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766467.3 → XP_015621953.1  nuclear pore complex protein NUP85

      UniProtKB/TrEMBL
      A0A0P0V845, B9EZM9, Q0JJD6, Q8LIZ0
      Conserved Domains (1) summary
      pfam07575
      Location:97 → 694
      Nucleopor_Nup85; Nup85 Nucleoporin
    Nucleotide Protein
    Heading Accession and Version

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