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    LOC4333271 la-related protein 6C [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333271, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4333271
    Gene description
    la-related protein 6C
    Locus tag
    OSNPB_030566500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4333271 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (21334149..21338091, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (20476600..20480566, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355653 Neighboring gene uncharacterized LOC136355654 Neighboring gene uncharacterized LOC4333272 Neighboring gene putative disease resistance RPP13-like protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    la-related protein 6C
    Names
    Os03g0566500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      21334149..21338091 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774708.3 → XP_015630194.1  la-related protein 6C isoform X2

      UniProtKB/TrEMBL
      B8AKV5
      Conserved Domains (2) summary
      cd08033
      Location:114 → 190
      LARP_6; La RNA-binding domain of La-related protein 6
      cl17169
      Location:205 → 290
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. XM_015774707.3 → XP_015630193.1  la-related protein 6C isoform X1

      UniProtKB/TrEMBL
      A0A8J8Y4Z6, B8AKV5, B9F9B9, Q0DQS0, Q10I29
      Conserved Domains (2) summary
      cd08033
      Location:114 → 190
      LARP_6; La RNA-binding domain of La-related protein 6
      cl17169
      Location:205 → 290
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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