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    LOC4327842 disease resistance protein RGA2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327842, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4327842
    Gene description
    disease resistance protein RGA2
    Locus tag
    OSNPB_010781200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1100D10.9
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    Genomic context

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    See LOC4327842 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (33703888..33710360)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (33098008..33104552)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene vacuolar protein sorting-associated protein 28 homolog 1 Neighboring gene putative disease resistance RPP13-like protein 1 Neighboring gene putative disease resistance RPP13-like protein 1 Neighboring gene putative disease resistance RPP13-like protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein RGA2
    Names
    Os01g0781200
    Rp1-like protein
    putative rust resistance protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      33703888..33710360
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755634.3 → XP_015611120.1  disease resistance protein RGA2 isoform X1

      UniProtKB/TrEMBL
      A0A0N7KDV2, B9ETC6, Q8LQR8
      Conserved Domains (3) summary
      sd00033
      Location:1015 → 1039
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:228 → 486
      NB-ARC; NB-ARC domain
      pfam18052
      Location:89 → 135
      Rx_N; Rx N-terminal domain

    2. XM_015755640.3 → XP_015611126.1  disease resistance protein RGA2 isoform X2

      UniProtKB/TrEMBL
      A0A0N7KDV2, B9ETC6, Q8LQR8
      Conserved Domains (2) summary
      sd00033
      Location:977 → 1001
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:228 → 515
      NB-ARC; NB-ARC domain
    Nucleotide Protein
    Heading Accession and Version

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