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    LOC4342334 hexose carrier protein HEX6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342334, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342334
    Gene description
    hexose carrier protein HEX6
    Locus tag
    OSNPB_070131600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1606_D04.111
    Expression
    Broad expression in leaves after flowering (RPKM 38.5), roots after flowering (RPKM 29.0) and 5 other tissues See more
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    Genomic context

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    See LOC4342334 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (1680417..1682537)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (1669315..1671323)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357351 Neighboring gene L-type lectin-domain containing receptor kinase SIT2 Neighboring gene L-type lectin-domain containing receptor kinase SIT2-like Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At3g47570 Neighboring gene L-type lectin-domain containing receptor kinase SIT2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables monosaccharide transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in monosaccharide transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hexose carrier protein HEX6
    Names
    OSJNBa0088O14.48
    Os07g0131600
    putative hexose carrier protein HEX6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      1680417..1682537
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789096.3 → XP_015644582.1  hexose carrier protein HEX6

      UniProtKB/TrEMBL
      A0A0P0X223, A2YHV5, A3BG86, Q8H4I7
      Conserved Domains (2) summary
      cd06174
      Location:81 → 480
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      pfam00083
      Location:30 → 494
      Sugar_tr; Sugar (and other) transporter
    Nucleotide Protein
    Heading Accession and Version

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