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    LOC4337868 uncharacterized LOC4337868 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337868, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4337868
    Gene description
    uncharacterized LOC4337868
    Locus tag
    OSNPB_050157300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4337868 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (3367469..3371450, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (3348811..3352845, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerase V subunit 7 Neighboring gene universal stress protein PHOS34 Neighboring gene uncharacterized LOC9270066 Neighboring gene uncharacterized LOC4337870

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribosomal small subunit binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ribosomal subunit export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translational initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translational termination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4337868
    Names
    Os05g0157300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      3367469..3371450 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784432.2 → XP_015639918.1  uncharacterized protein LOC4337868 isoform X1

      UniProtKB/TrEMBL
      B9FMK4, Q0DKK4, Q75M00
      Conserved Domains (2) summary
      COG1142
      Location:66 → 203
      HycB; Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion]
      pfam12617
      Location:205 → 402
      LdpA_C; Iron-Sulfur binding protein C terminal

    2. XM_066310388.1 → XP_066166485.1  uncharacterized protein LOC4337868 isoform X2

      UniProtKB/TrEMBL
      B9FMK4
    Nucleotide Protein
    Heading Accession and Version

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