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    LOC4352591 factor of DNA methylation 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352591, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4352591
    Gene description
    factor of DNA methylation 1
    Locus tag
    OSNPB_120572500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4352591 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (24286258..24290384)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (23596065..23600279)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene protein rough sheath 2 homolog Neighboring gene serine/arginine-rich SC35-like splicing factor SCL30 Neighboring gene xyloglucan galactosyltransferase KATAMARI1 homolog Neighboring gene uncharacterized LOC4352592

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in gene silencing by siRNA-directed DNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    factor of DNA methylation 1
    Names
    Os12g0572500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      24286258..24290384
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015763176.3 → XP_015618662.1  factor of DNA methylation 1 isoform X1

      UniProtKB/TrEMBL
      A3CIN3, Q2QNA8
      Conserved Domains (2) summary
      COG1196
      Location:3 → 108
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam03469
      Location:238 → 372
      XH; XH domain

    2. XM_015763179.3 → XP_015618665.1  factor of DNA methylation 1 isoform X2

      UniProtKB/TrEMBL
      A3CIN3, Q0IMF4, Q2QNA9
      Conserved Domains (2) summary
      COG1196
      Location:3 → 108
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam03469
      Location:238 → 372
      XH; XH domain

    3. XM_015763178.3 → XP_015618664.1  factor of DNA methylation 1 isoform X1

      UniProtKB/TrEMBL
      A3CIN3, Q2QNA8
      Conserved Domains (2) summary
      COG1196
      Location:3 → 108
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam03469
      Location:238 → 372
      XH; XH domain

    4. XM_026022248.2 → XP_025878033.1  factor of DNA methylation 1 isoform X2

      UniProtKB/TrEMBL
      A3CIN3, Q0IMF4, Q2QNA9
      Conserved Domains (2) summary
      COG1196
      Location:3 → 108
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam03469
      Location:238 → 372
      XH; XH domain

    RNA

    1. XR_003240115.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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