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    LOC9269617 NAD(P)H-quinone oxidoreductase subunit L, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9269617, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9269617
    Gene description
    NAD(P)H-quinone oxidoreductase subunit L, chloroplastic
    Locus tag
    OSNPB_050348100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves before flowering (RPKM 92.3), roots after flowering (RPKM 48.3) and 3 other tissues See more
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    Genomic context

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    See LOC9269617 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (16513709..16524270, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (16421509..16423227, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene protein G1-like9 Neighboring gene uncharacterized LOC107280959 Neighboring gene putative wall-associated receptor kinase-like 16 Neighboring gene uncharacterized LOC107280833

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NAD(P)H-quinone oxidoreductase subunit L, chloroplastic
    Names
    Os05g0348100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      16513709..16524270 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782736.3 → XP_015638222.1  NAD(P)H-quinone oxidoreductase subunit L, chloroplastic

      UniProtKB/TrEMBL
      B9FH79
      Conserved Domains (1) summary
      pfam10716
      Location:94 → 169
      NdhL; NADH dehydrogenase transmembrane subunit
    Nucleotide Protein
    Heading Accession and Version

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