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    LOC4346134 MADS-box transcription factor 7-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346134, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4346134
    Gene description
    MADS-box transcription factor 7-like
    Locus tag
    OSNPB_080531700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    M79; AGL6; MADS7; MADS45; OsMADS7; FDRMADS1; OsMADS45; RMADS216
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    Genomic context

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    See LOC4346134 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (26654434..26658902)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (26507922..26512253)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4346132 Neighboring gene squamosa promoter-binding-like protein 16 Neighboring gene MADS-box transcription factor 51-like Neighboring gene glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of two rice MADS box genes that control flowering time. Kang HG, et al. Mol Cells, 1997 Aug 31. PMID 9339904
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mADS-box transcription factor 7
    Names
    LOC_Os08g41950
    MADS box protein
    MADS-box protein 45
    MADS-box protein RMADS216
    MADS-box transcription factor 7
    P0702E04.10
    Protein AGAMOUS-like 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403666.1 → NP_001390595.1  mADS-box transcription factor 7

      Status: VALIDATED

      Source sequence(s)
      AK100263, EG714165
      UniProtKB/Swiss-Prot
      A2YXF5, B7EQ75, B8B935, O04063, O24229, O24234, P0C5B0, Q0J466, Q6Q9I1, Q6YZE7, Q7XB96, Q9SWQ5
      UniProtKB/TrEMBL
      D3U2G6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      26654434..26658902
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0J466.2 GenPept UniProtKB/Swiss-Prot:Q0J466

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials