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    LOC4344388 uncharacterized LOC4344388 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344388, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4344388
    Gene description
    uncharacterized LOC4344388
    Locus tag
    OSNPB_070693700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots after flowering (RPKM 26.6), leaves after flowering (RPKM 22.9) and 6 other tissues See more
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    Genomic context

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    See LOC4344388 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (29756600..29764986)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29522374..29530787)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene probable AMP deaminase Neighboring gene protein trichome birefringence-like 28 Neighboring gene increased DNA methylation 1 Neighboring gene omega-3 fatty acid desaturase, chloroplastic Neighboring gene uncharacterized LOC4344390

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables myosin II binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables syntaxin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4344388
    Names
    Os07g0693700
    P0034A04.133

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      29756600..29764986
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015790975.3 → XP_015646461.1  uncharacterized protein LOC4344388 isoform X1

      UniProtKB/TrEMBL
      B8B6B1, B9FV18, Q0D3C7
      Conserved Domains (3) summary
      cd15873
      Location:1055 → 1094
      R-SNARE_STXBP5_6; SNARE domain of STXBP5, STXBP6 and related proteins
      sd00039
      Location:477 → 527
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:490 → 658
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_015790976.3 → XP_015646462.1  uncharacterized protein LOC4344388 isoform X2

      UniProtKB/TrEMBL
      B8B6B1
      Conserved Domains (4) summary
      COG2319
      Location:488 → 704
      WD40; WD40 repeat [General function prediction only]
      cd15873
      Location:1054 → 1093
      R-SNARE_STXBP5_6; SNARE domain of STXBP5, STXBP6 and related proteins
      sd00039
      Location:476 → 526
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:489 → 657
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. XM_066312548.1 → XP_066168645.1  uncharacterized protein LOC4344388 isoform X3

      UniProtKB/TrEMBL
      B8B6B1
    Nucleotide Protein
    Heading Accession and Version

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