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    LOC4343070 photosystem I reaction center subunit IV, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343070, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4343070
    Gene description
    photosystem I reaction center subunit IV, chloroplastic
    Locus tag
    OSNPB_070435300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4343070 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (14689947..14691034)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (14533284..14534362)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene methionine aminopeptidase 1B, chloroplastic Neighboring gene 26S proteasome non-ATPase regulatory subunit 8 homolog A Neighboring gene ribosome biogenesis protein BOP1 homolog Neighboring gene histone-lysine N-methyltransferase family member SUVH2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in photosynthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of photosystem I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of photosystem I reaction center IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    photosystem I reaction center subunit IV, chloroplastic
    Names
    Os07g0435300
    P0673E01.25
    putative Photosystem I reaction center subunit IV

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422118.1 → NP_001409047.1  photosystem I reaction center subunit IV, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AU095651, C24946, CA758714, CB681950, CI512735, CI569938
      UniProtKB/TrEMBL
      A2YKQ6, A3BJ59, Q6Z3V7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      14689947..14691034
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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