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    LOC4337126 diacylglycerol kinase 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337126, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337126
    Gene description
    diacylglycerol kinase 1-like
    Locus tag
    OSNPB_040634700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 75.2), leaves after flowering (RPKM 27.1) and 4 other tissues See more
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    Genomic context

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    See LOC4337126 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (32794457..32799133)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (32286666..32291486)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136356273 Neighboring gene uncharacterized LOC9272449 Neighboring gene uncharacterized LOC4337127 Neighboring gene uncharacterized LOC4337129

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP-dependent diacylglycerol kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein kinase C-activating G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    diacylglycerol kinase 1-like
    Names
    Os04g0634700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      32794457..32799133
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778369.3 → XP_015633855.1  diacylglycerol kinase 1-like isoform X2

      UniProtKB/Swiss-Prot
      A0A0P0WF54, Q7XQT2
      UniProtKB/TrEMBL
      A2XXZ4, Q307R0
      Conserved Domains (2) summary
      pfam00609
      Location:240 → 413
      DAGK_acc; Diacylglycerol kinase accessory domain
      pfam00781
      Location:45 → 180
      DAGK_cat; Diacylglycerol kinase catalytic domain

    2. XM_015778368.3 → XP_015633854.1  diacylglycerol kinase 1-like isoform X1

      UniProtKB/TrEMBL
      A2XXZ4, Q307R0
      Conserved Domains (2) summary
      pfam00609
      Location:244 → 417
      DAGK_acc; Diacylglycerol kinase accessory domain
      pfam00781
      Location:49 → 184
      DAGK_cat; Diacylglycerol kinase catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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