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    LOC4324537 CRS2-associated factor 1, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324537, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4324537
    Gene description
    CRS2-associated factor 1, chloroplastic-like
    Locus tag
    OSNPB_010495900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_01906; OJ1126_G08.1
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    Genomic context

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    See LOC4324537 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (17571989..17575792)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (17012526..17016324)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein trichome birefringence-like 8 Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC112937700 Neighboring gene uncharacterized LOC4324538

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Group II intron splicing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CRS2-associated factor 1, chloroplastic
    Names
    Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1
    LOC_Os01g31110
    OSJNBa0029L04.25
    putative CRS2-associated factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428136.1 → NP_001415065.1  CRS2-associated factor 1, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK065221, CI328412, CI592242
      UniProtKB/Swiss-Prot
      B7EAM6, Q5VMQ5
      UniProtKB/TrEMBL
      B8A8K9

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      17571989..17575792
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766428.2 → XP_015621914.1  CRS2-associated factor 1, chloroplastic isoform X1

      UniProtKB/TrEMBL
      B8A8K9
      Conserved Domains (1) summary
      pfam01985
      Location:186 → 261
      CRS1_YhbY; CRS1 / YhbY (CRM) domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5VMQ5.1 GenPept UniProtKB/Swiss-Prot:Q5VMQ5

    Gene LinkOut

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    Research Materials