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    LOC4347397 probable caffeoyl-CoA O-methyltransferase At4g26220 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347397, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347397
    Gene description
    probable caffeoyl-CoA O-methyltransferase At4g26220
    Locus tag
    OSNPB_090481400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4347397 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (22859048..22860395, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (18474986..18476398, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene BURP domain-containing protein 15 Neighboring gene phosphatidylinositol/phosphatidylcholine transfer protein SFH6 Neighboring gene WPP domain-interacting protein 1 Neighboring gene photosystem I reaction center subunit V, chloroplastic Neighboring gene protein MAIN-LIKE 2-like Neighboring gene uncharacterized LOC136351807

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables O-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables S-adenosylmethionine-dependent methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable caffeoyl-CoA O-methyltransferase At4g26220
    Names
    Os09g0481400
    P0463D04.22
    P0463G11.37
    putative Caffeoyl-CoA O-methyltransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      22859048..22860395 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755473.3 → XP_015610959.1  probable caffeoyl-CoA O-methyltransferase At4g26220

      UniProtKB/TrEMBL
      A0A0P0XP39, A2Z2F5, Q652C2, Q69QR4
      Conserved Domains (1) summary
      cl17173
      Location:27 → 258
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    Nucleotide Protein
    Heading Accession and Version

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