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    LOC4332853 chromatin-remodeling ATPase INO80 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332853, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4332853
    Gene description
    chromatin-remodeling ATPase INO80
    Locus tag
    OSNPB_030352450
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 22.4), leaves before flowering (RPKM 21.0) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (13292223..13303712)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (13236453..13247343)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene nucleolar protein 56 Neighboring gene nuclear/nucleolar GTPase 2-like Neighboring gene uncharacterized LOC112938290 Neighboring gene acyl carrier protein 2, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development. Li C, et al. J Integr Plant Biol, 2018 Feb. PMID 29045007
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. OsINO80 is involved in regulation of the gibberellic acid biosynthesis pathway and plays critical functions for many aspects of rice plant growth and development.
      Title: Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Ino80 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromatin-remodeling ATPase INO80
    Names
    DNA helicase INO80
    Os03g0352450
    Os03g0352500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      13292223..13303712
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775989.3 → XP_015631475.1  chromatin-remodeling ATPase INO80

      UniProtKB/TrEMBL
      Q10LF6
      Conserved Domains (4) summary
      PLN03142
      Location:424 → 878
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18793
      Location:1176 → 1308
      SF2_C_SNF; C-terminal helicase domain of the SNF family helicases
      pfam13892
      Location:341 → 470
      DBINO; DNA-binding domain
      cl28899
      Location:569 → 795
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
    Nucleotide Protein
    Heading Accession and Version

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