LOC4352484 trafficking protein particle complex II-specific subunit 130 homolog [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4352484
Gene description: trafficking protein particle complex II-specific subunit 130 homolog
Locus tag: OSNPB_120554400
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: TRS130
Expression: Ubiquitous expression in flower buds (RPKM 25.8), leaves after flowering (RPKM 25.6) and 6 other tissues See more
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Genomic context

Location:: chromosome: 12

Exon count:: 21

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	12	NC_089046.1 (23206259..23216630, complement)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	12	NC_029267.1 (22518832..22529225, complement)

Chromosome 12 - NC_089046.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Process	Evidence Code	Pubs
involved_in early endosome to Golgi transport	IEA Inferred from Electronic Annotation more info	PubMed
involved_in intra-Golgi vesicle-mediated transport	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of TRAPPII protein complex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: trafficking protein particle complex II-specific subunit 130 homolog

Names: LOC_Os12g36760; TRAPP II-specific subunit 130 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001423562.1 → NP_001410491.1 trafficking protein particle complex II-specific subunit 130 homolog

Status: VALIDATED

Source sequence(s)

AK072345, CI335069, CI591841

UniProtKB/Swiss-Prot

A0A0P0YBB0, Q2QNU0

UniProtKB/TrEMBL

B9GDP5

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089046.1 Reference ASM3414082v1 Primary Assembly

Range

23206259..23216630 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015764629.3 → XP_015620115.1 trafficking protein particle complex II-specific subunit 130 homolog isoform X1

UniProtKB/TrEMBL

B8BMF7

Conserved Domains (2) summary

pfam11817
Location:363 → 430

Foie-gras_1; Foie gras liver health family 1

pfam12584
Location:907 → 990

TRAPPC10; Trafficking protein particle complex subunit 10, TRAPPC10