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    LOC4329284 uncharacterized LOC4329284 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329284, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329284
    Gene description
    uncharacterized LOC4329284
    Locus tag
    OSNPB_020457500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 9.8), flower buds (RPKM 2.2) and 4 other tissues See more
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    Genomic context

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    See LOC4329284 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (15691183..15696920, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (15233137..15239364, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355238 Neighboring gene histone H3.3 Neighboring gene alpha-terpineol synthase, chloroplastic Neighboring gene GDSL esterase/lipase At2g42990

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4329284
    Names
    OSJNBa0063K04.42
    OSJNBa0078K05.3
    Os02g0457500
    ankyrin-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      15691183..15696920 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768388.3 → XP_015623874.1  uncharacterized protein LOC4329284

      UniProtKB/TrEMBL
      A0A0P0VIN3, Q6K393
      Conserved Domains (4) summary
      PHA02874
      Location:191 → 504
      PHA02874; ankyrin repeat protein; Provisional
      PHA03095
      Location:375 → 646
      PHA03095; ankyrin-like protein; Provisional
      sd00045
      Location:322 → 354
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:100 → 216
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein
    Heading Accession and Version

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