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    LOC4347408 uncharacterized LOC4347408 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347408, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347408
    Gene description
    uncharacterized LOC4347408
    Locus tag
    OSNPB_090483100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4347408 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (23058533..23059198)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (18662858..18663563)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9270116 Neighboring gene chalcone 4'-O-glucosyltransferase-like Neighboring gene UDP-glycosyltransferase 88B1-like Neighboring gene UDP-glycosyltransferase 88B1 Neighboring gene ubiquitin-ribosomal protein eL40z fusion protein-like Neighboring gene uncharacterized LOC4347410

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4347408
    Names
    Os09g0483100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      23058533..23059198
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756439.3 → XP_015611925.1  uncharacterized protein LOC4347408

      UniProtKB/TrEMBL
      A0A0P0XNN6, A2Z2H9, A3C025, Q0J0U5
      Conserved Domains (1) summary
      cl25352
      Location:29 → 103
      EFh_PEF; The penta-EF hand (PEF) family
    Nucleotide Protein
    Heading Accession and Version

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