U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC9271635 protein SPEAR2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9271635, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC9271635
    Gene description
    protein SPEAR2
    Locus tag
    OSNPB_010212500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC9271635 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (6149085..6151434, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (6139513..6142124, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 Neighboring gene uncharacterized LOC107280815 Neighboring gene sodium/calcium exchanger NCL1-like Neighboring gene RING-H2 finger protein ATL39 Neighboring gene RING-H2 finger protein ATL39

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein SPEAR2
    Names
    OSJNBa0038J17.1
    Os01g0212500
    P0031E09.41

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      6149085..6151434 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766398.3 → XP_015621884.1  protein SPEAR2 isoform X1

      UniProtKB/TrEMBL
      B8AAM9, Q5QN62, Q5QNI8

    2. XM_066310601.1 → XP_066166698.1  protein SPEAR2 isoform X3

    3. XM_015766399.3 → XP_015621885.1  protein SPEAR2 isoform X4

      UniProtKB/TrEMBL
      B8AAM9

    4. XM_066310597.1 → XP_066166694.1  protein SPEAR2 isoform X2

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials