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    LOC4342596 disease resistance protein RPM1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342596, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342596
    Gene description
    disease resistance protein RPM1
    Locus tag
    OSNPB_070186500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4342596 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (4679455..4683546)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (4618627..4622750)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112939696 Neighboring gene chromatin remodeling protein EBS Neighboring gene general transcriptional corepressor CYC8-like Neighboring gene probable D-2-hydroxyglutarate dehydrogenase, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein RPM1
    Names
    Os07g0186500
    Os07g08890-like protein
    P0506C07.14
    putative disease resistance protein RPR1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      4679455..4683546
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789724.3 → XP_015645210.1  disease resistance protein RPM1

      UniProtKB/TrEMBL
      A0A0N7KN18, A0A0U2S6Z9, A3BHB4, Q7XI19
      Conserved Domains (4) summary
      PLN03210
      Location:171 → 875
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00033
      Location:585 → 607
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:183 → 428
      NB-ARC; NB-ARC domain
      pfam18052
      Location:5 → 107
      Rx_N; Rx N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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