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    LOC4330898 zinc finger protein 8 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330898, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330898
    Gene description
    zinc finger protein 8
    Locus tag
    OSNPB_020775600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1448_G06.27
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    Genomic context

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    See LOC4330898 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (33245555..33246881, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (32750146..32751585, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4330896 Neighboring gene kinesin-like protein KIN-7D, chloroplastic Neighboring gene uncharacterized LOC4330899 Neighboring gene putative defensin-like protein 154

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in response to gibberellin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in trichome differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in trichome morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein 8
    Names
    OSJNBb0013K01.8
    Os02g0775600
    putative zinc finger protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      33245555..33246881 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768413.3 → XP_015623899.1  zinc finger protein 8

      UniProtKB/TrEMBL
      A2XA63, Q0DX41, Q6YZ50, Q6Z7K0
      Conserved Domains (1) summary
      pfam13912
      Location:90 → 115
      zf-C2H2_6; C2H2-type zinc finger
    Nucleotide Protein
    Heading Accession and Version

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