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    LOC4327987 amino acid permease 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327987, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4327987
    Gene description
    amino acid permease 3
    Locus tag
    OSNPB_020102200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1435_F07.15
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    Genomic context

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    See LOC4327987 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (125548..127946)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (119316..121730)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4327985 Neighboring gene uncharacterized protein At3g28850 Neighboring gene thiosulfate sulfurtransferase 18 Neighboring gene uncharacterized LOC4327989 Neighboring gene phytochrome-interacting ankyrin-repeat protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables amino acid transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in amino acid transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    amino acid permease 3
    Names
    B1370C05.25
    Os02g0102200
    putative amino acid transporter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      125548..127946
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768008.3 → XP_015623494.1  amino acid permease 3 isoform X1

      UniProtKB/TrEMBL
      A2WZS1, Q0E4S9, Q6YU84, Q6ZFK9
      Conserved Domains (1) summary
      pfam01490
      Location:71 → 506
      Aa_trans; Transmembrane amino acid transporter protein

    2. XM_066307934.1 → XP_066164031.1  amino acid permease 3 isoform X2

    3. XM_026022582.2 → XP_025878367.1  amino acid permease 3 isoform X2

      UniProtKB/TrEMBL
      A2WZS1
      Conserved Domains (1) summary
      pfam01490
      Location:37 → 472
      Aa_trans; Transmembrane amino acid transporter protein
    Nucleotide Protein
    Heading Accession and Version

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