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    LOC4343564 uncharacterized LOC4343564 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343564, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4343564
    Gene description
    uncharacterized LOC4343564
    Locus tag
    OSNPB_070555000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 4.1), flower buds (RPKM 3.9) and 3 other tissues See more
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    Genomic context

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    See LOC4343564 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (22336799..22342849)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (22110658..22113703)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene putative F-box/LRR-repeat protein At3g18150 Neighboring gene uncharacterized LOC4343562 Neighboring gene eukaryotic translation initiation factor 4G-like Neighboring gene uncharacterized LOC9267874

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4343564
    Names
    F-box domain-containing protein
    OSJNBa0058I18.3
    OSJNBa0058I18.5
    Os07g0555000
    Os07g0555100
    P0013G11.38
    P0013G11.40

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      22336799..22342849
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791013.3 → XP_015646499.2  uncharacterized protein LOC4343564

    Nucleotide Protein
    Heading Accession and Version

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