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    LOC4330936 protein TONSOKU [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330936, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4330936
    Gene description
    protein TONSOKU
    Locus tag
    OSNPB_020782800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1311_D08.11; OJ1311_D08.12
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    Genomic context

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    See LOC4330936 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (33704613..33715416)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (33208852..33221160)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene phosphoinositide phosphatase SAC3 Neighboring gene ethylene-responsive transcription factor 1-like Neighboring gene uncharacterized LOC107280130 Neighboring gene uncharacterized LOC136355412 Neighboring gene probable pectinesterase/pectinesterase inhibitor 35

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in epigenetic regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in meristem structural organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to DNA damage checkpoint signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein TONSOKU
    Names
    BRUSHY1-like
    Os02g0782800
    Os02g0782900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      33704613..33715416
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769976.3 → XP_015625462.1  protein TONSOKU

      UniProtKB/TrEMBL
      B9F3L2
      Conserved Domains (4) summary
      COG0457
      Location:17 → 305
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00033
      Location:923 → 947
      LRR_RI; leucine-rich repeat [structural motif]
      sd00006
      Location:174 → 202
      TPR; TPR repeat [structural motif]
      cl39015
      Location:892 → 1153
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    Nucleotide Protein
    Heading Accession and Version

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