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    LOC107278342 disease resistance protein RPP13 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 107278342, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC107278342
    Gene description
    disease resistance protein RPP13
    Locus tag
    OSNPB_020597200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1568_B05.21; OJ1568_B05.22
    Expression
    Broad expression in roots before flowering (RPKM 39.0), leaves before flowering (RPKM 28.3) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (23692254..23702544)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23209653..23212871)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene actin-related protein 3-like Neighboring gene ultraviolet-B receptor UVR8 Neighboring gene BAG family molecular chaperone regulator 1 Neighboring gene uncharacterized LOC136355147

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to fungus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein RPP13; putative disease resistance protein RGA1
    Names
    L-zip+NBS+LRR-like protein
    NBS-LRR disease resistance protein-like
    Os02g0597200
    Os02g0597300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      23692254..23702544
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066307807.1 → XP_066163904.1  putative disease resistance protein RGA1 isoform X3

    2. XM_066307805.1 → XP_066163902.1  putative disease resistance protein RGA1 isoform X1

      UniProtKB/TrEMBL
      B9F0W1

    3. XM_066307808.1 → XP_066163905.1  putative disease resistance protein RGA1 isoform X4

      UniProtKB/TrEMBL
      B7E9Q5, Q6K905

    4. XM_066307806.1 → XP_066163903.1  putative disease resistance protein RGA1 isoform X2

    5. XM_066307809.1 → XP_066163906.1  disease resistance protein RPP13 isoform X5

      UniProtKB/TrEMBL
      A2X6S5

    RNA

    1. XR_010739526.1 RNA Sequence

    2. XR_010739527.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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