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    LOC4331594 uncharacterized LOC4331594 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331594, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331594
    Gene description
    uncharacterized LOC4331594
    Locus tag
    OSNPB_030144000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 7.7), leaves before flowering (RPKM 6.8) and 6 other tissues See more
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    Genomic context

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    See LOC4331594 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (2459282..2464185, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (2450477..2455353, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4331592 Neighboring gene protein PIR Neighboring gene dirigent protein 16 Neighboring gene uncharacterized LOC136355792 Neighboring gene uncharacterized LOC107280467

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4331594
    Names
    Os03g0144000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      2459282..2464185 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775523.3 → XP_015631009.1  uncharacterized protein LOC4331594 isoform X2

      UniProtKB/TrEMBL
      A0A2S1P7R3, B9FB12
      Conserved Domains (1) summary
      pfam14868
      Location:270 → 875
      DUF4487; Domain of unknown function (DUF4487)

    2. XM_015775522.3 → XP_015631008.1  uncharacterized protein LOC4331594 isoform X1

      UniProtKB/TrEMBL
      B9FB12
      Conserved Domains (1) summary
      pfam14868
      Location:271 → 876
      DUF4487; Domain of unknown function (DUF4487)
    Nucleotide Protein
    Heading Accession and Version

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