U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4347482 DNA topoisomerase 3-beta-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347482, updated on 3-Dec-2024

    Summary

    Gene symbol
    LOC4347482
    Gene description
    DNA topoisomerase 3-beta-like
    Locus tag
    OSNPB_090500600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    TOP3B
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LOC4347482 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (23779956..23793716)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (19369184..19382950)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4347480 Neighboring gene type I inositol polyphosphate 5-phosphatase 13 Neighboring gene cytochrome b561 and DOMON domain-containing protein At3g25290 Neighboring gene auxin-induced in root cultures protein 12

    Genomic regions, transcripts, and products

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables DNA topoisomerase type I (single strand cut, ATP-independent) activity IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in DNA topological change IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    DNA topoisomerase 3-beta
    Names
    LOC_Os09g32450
    NP_001409731.1
    XP_066159975.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422802.1NP_001409731.1  DNA topoisomerase 3-beta

      Status: VALIDATED

      Source sequence(s)
      AK066999, AP014965, CF306918, CI592347
      UniProtKB/Swiss-Prot
      A0A0P0XQ49, Q0J0S6
      UniProtKB/TrEMBL
      B8BD52

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      23779956..23793716
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066303878.1XP_066159975.1  DNA topoisomerase 3-beta isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0XQ49, Q0J0S6
      UniProtKB/TrEMBL
      B8BD52