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    LOC4341868 putative anthocyanidin reductase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341868, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341868
    Gene description
    putative anthocyanidin reductase
    Locus tag
    OSNPB_060683100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0009H10.5
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    Genomic context

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    See LOC4341868 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (29336698..29338762, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (28470157..28472170, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH domain-containing protein 13-like Neighboring gene protein HEAT-STRESS-ASSOCIATED 32 Neighboring gene uncharacterized LOC4341867 Neighboring gene 50S ribosomal protein L24, chloroplastic Neighboring gene beta-glucosidase 25-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dihydroflavonol 4-reductase; putative anthocyanidin reductase
    Names
    Os06g0683100
    P0547F09.38
    dihydroflavonol-4-reductase
    putative dihydroflavonol-4-reductase DFR1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      29336698..29338762 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786208.3 → XP_015641694.1  putative anthocyanidin reductase isoform X4

      UniProtKB/TrEMBL
      Q0DA23, Q653W0
      Conserved Domains (1) summary
      PLN02896
      Location:8 → 367
      PLN02896; cinnamyl-alcohol dehydrogenase

    2. XM_015786207.3 → XP_015641693.1  putative anthocyanidin reductase isoform X3

      Conserved Domains (1) summary
      PLN02896
      Location:8 → 369
      PLN02896; cinnamyl-alcohol dehydrogenase

    3. XM_066311204.1 → XP_066167301.1  dihydroflavonol 4-reductase isoform X6

    4. XM_015786206.3 → XP_015641692.1  putative anthocyanidin reductase isoform X2

      UniProtKB/TrEMBL
      B9FQJ1
      Conserved Domains (1) summary
      PLN02896
      Location:8 → 375
      PLN02896; cinnamyl-alcohol dehydrogenase

    5. XM_015786205.3 → XP_015641691.1  putative anthocyanidin reductase isoform X1

      Conserved Domains (1) summary
      PLN02896
      Location:8 → 377
      PLN02896; cinnamyl-alcohol dehydrogenase

    6. XM_015786209.3 → XP_015641695.1  dihydroflavonol 4-reductase isoform X5

      Conserved Domains (2) summary
      cd08958
      Location:20 → 326
      FR_SDR_e; flavonoid reductase (FR), extended (e) SDRs
      pfam01370
      Location:20 → 292
      Epimerase; NAD dependent epimerase/dehydratase family
    Nucleotide Protein
    Heading Accession and Version

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