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    LOC9268461 suppressor protein SRP40 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9268461, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9268461
    Gene description
    suppressor protein SRP40
    Locus tag
    OSNPB_110677400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    Location:
    chromosome: 11
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (29328541..29330152, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (27366738..27368323, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276760 Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene ribonucleases P/MRP protein subunit POP1 Neighboring gene probable serine/threonine-protein kinase SIS8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables enzyme inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    suppressor protein SRP40
    Names
    Os11g0677400
    transcriptional regulator ATRX homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      29328541..29330152 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761126.3 → XP_015616612.1  suppressor protein SRP40

      UniProtKB/TrEMBL
      A0A679AJH6, A3BMR6, Q2QZQ3
      Conserved Domains (1) summary
      cd15800
      Location:303 → 453
      PMEI-like_2; Uncharacterized subfamily of plant invertase/pectin methylesterase inhibitors
    Nucleotide Protein
    Heading Accession and Version

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