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    LOC4346238 MYB-like transcription factor ODO1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346238, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4346238
    Gene description
    MYB-like transcription factor ODO1
    Locus tag
    OSNPB_080548000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1112_E06.10; OJ1112_E06.11
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    Genomic context

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    See LOC4346238 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (27633318..27640271, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (27486203..27493192, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene probable carboxylesterase 8 Neighboring gene flavonoid 3'-monooxygenase CYP75B137 Neighboring gene uncharacterized LOC4346239 Neighboring gene E3 ubiquitin ligase BIG BROTHER-related

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    MYB-like transcription factor ODO1
    Names
    Os08g0548000
    P0544G09.26
    P0544G09.27
    protein ODORANT1
    putative Myb13 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      27633318..27640271 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795228.3 → XP_015650714.1  MYB-like transcription factor ODO1

      UniProtKB/TrEMBL
      A2YXT3, Q6YSZ5, Q6Z9C2
      Conserved Domains (1) summary
      PLN03091
      Location:1 → 191
      PLN03091; hypothetical protein; Provisional

    2. XM_015795229.3 → XP_015650715.1  MYB-like transcription factor ODO1

      UniProtKB/TrEMBL
      A2YXT3, Q6YSZ5, Q6Z9C2
      Conserved Domains (1) summary
      PLN03091
      Location:1 → 191
      PLN03091; hypothetical protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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