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    LOC4343414 septum-promoting GTP-binding protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343414, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4343414
    Gene description
    septum-promoting GTP-binding protein 1
    Locus tag
    OSNPB_070522900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1372_D12.121
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    Genomic context

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    See LOC4343414 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (20476507..20480220)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (20249145..20253111)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene ABC transporter G family member 43-like Neighboring gene glutamate receptor 3.4 Neighboring gene small nucleolar RNA R66 Neighboring gene ribosomal protein eL42 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    septum-promoting GTP-binding protein 1
    Names
    Os07g0522900
    putative Septum-promoting GTP-binding protein 1 (GTPase spg1)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      20476507..20480220
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015790616.2 → XP_015646102.1  septum-promoting GTP-binding protein 1

      UniProtKB/TrEMBL
      A3BKG5, Q84LH2
      Conserved Domains (1) summary
      cd04128
      Location:129 → 310
      Spg1; Septum-promoting GTPase (Spg1)
    Nucleotide Protein
    Heading Accession and Version

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