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    LOC4344980 BTB/POZ and MATH domain-containing protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344980, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4344980
    Gene description
    BTB/POZ and MATH domain-containing protein 1
    Locus tag
    OSNPB_080227100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1221_H04.133
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    Genomic context

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    See LOC4344980 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (7808578..7810109, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (7755742..7758164, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ and MATH domain-containing protein 2 Neighboring gene uncharacterized LOC136351468 Neighboring gene BTB/POZ and MATH domain-containing protein 1 Neighboring gene BTB/POZ and MATH domain-containing protein 2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BTB/POZ and MATH domain-containing protein 1
    Names
    Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain MBTB22
    Os08g0227100
    speckle-type POZ protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      7808578..7810109 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793194.3 → XP_015648680.1  BTB/POZ and MATH domain-containing protein 1

      UniProtKB/TrEMBL
      A0A0P0XDE9, A2YSK4, Q0J765, Q8H4G2
      Conserved Domains (3) summary
      cd00121
      Location:35 → 163
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
      cl38908
      Location:190 → 303
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
      cl28903
      Location:303 → 362
      BACK; BACK (BTB and C-terminal Kelch) domain
    Nucleotide Protein
    Heading Accession and Version

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