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    LOC4341861 peroxidase 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341861, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4341861
    Gene description
    peroxidase 3
    Locus tag
    OSNPB_060681600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    prx89
    Expression
    Biased expression in flowers (RPKM 77.4), flower buds (RPKM 17.0) and 1 other tissue See more
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (29280581..29291997)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (28413958..28425450)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene polyubiquitin Neighboring gene leucine-rich repeat extensin-like protein 5 Neighboring gene uncharacterized vacuolar membrane protein YML018C Neighboring gene uncharacterized LOC136357068 Neighboring gene small nucleolar RNA Z157/R69/R10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in hydrogen peroxide catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plant-type cell wall IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasmodesma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peroxidase 3
    Names
    Os06g0681600
    P0547F09.20-1
    class III peroxidase 89
    putative peroxidase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      29280581..29291997
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785636.3 → XP_015641122.1  peroxidase 3

      UniProtKB/TrEMBL
      A0A0N7KML5, A0A8J8XYV9, A3BEQ3, B8B1H3, Q5U1K4, Q653X4
      Conserved Domains (1) summary
      cd00693
      Location:30 → 332
      secretory_peroxidase; Horseradish peroxidase and related secretory plant peroxidases
    Nucleotide Protein
    Heading Accession and Version

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