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    LOC4334543 splicing factor 3B subunit 6-like protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334543, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4334543
    Gene description
    splicing factor 3B subunit 6-like protein
    Locus tag
    OSNPB_030811700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4334543 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (34971623..34972305)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (33998795..33999573)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein MIZU-KUSSEI 1 Neighboring gene peptidyl-prolyl cis-trans isomerase CYP22 Neighboring gene uncharacterized LOC4334544 Neighboring gene ADP-ribosylation factor 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U2 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    splicing factor 3B subunit 6-like protein
    Names
    Os03g0811700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      34971623..34972305
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776436.3 → XP_015631922.1  splicing factor 3B subunit 6-like protein

      UniProtKB/TrEMBL
      B8AM86, B9F6X3, Q7XZG6
      Conserved Domains (1) summary
      cd12241
      Location:17 → 93
      RRM_SF3B14; RNA recognition motif (RRM) found in pre-mRNA branch site protein p14 (SF3B14) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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