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    LOC4324477 mediator of RNA polymerase II transcription subunit 9 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324477, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4324477
    Gene description
    mediator of RNA polymerase II transcription subunit 9
    Locus tag
    OSNPB_010501000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4324477 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (17869529..17885969, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (17309297..17325757, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene tyrosine--tRNA ligase, chloroplastic/mitochondrial-like Neighboring gene uncharacterized LOC4324476 Neighboring gene sec-independent protein translocase protein TATC, chloroplastic-like Neighboring gene oxygen-evolving enhancer protein 1, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    part_of mediator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mediator of RNA polymerase II transcription subunit 9
    Names
    B1080D07.19
    Os01g0501000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      17869529..17885969 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311813.1 → XP_066167910.1  mediator of RNA polymerase II transcription subunit 9 isoform X2

      UniProtKB/TrEMBL
      A0A0P0V318, Q0JMI2, Q5QMV5

    2. XM_015765913.3 → XP_015621399.1  mediator of RNA polymerase II transcription subunit 9 isoform X1

    3. XM_015765914.3 → XP_015621400.1  mediator of RNA polymerase II transcription subunit 9 isoform X2

      UniProtKB/TrEMBL
      A0A0P0V318, Q0JMI2, Q5QMV5

    4. XM_015765912.3 → XP_015621398.1  mediator of RNA polymerase II transcription subunit 9 isoform X1

    Nucleotide Protein
    Heading Accession and Version

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