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    LOC9268288 type I inositol polyphosphate 5-phosphatase 10 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9268288, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC9268288
    Gene description
    type I inositol polyphosphate 5-phosphatase 10
    Locus tag
    OSNPB_010814200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC9268288 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (35236424..35242241, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (34629314..34635502, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4327594 Neighboring gene uncharacterized LOC125752050 Neighboring gene non-specific lipid transfer protein GPI-anchored 2 Neighboring gene putative pentatricopeptide repeat-containing protein At5g40405 Neighboring gene uncharacterized serine-rich protein C215.13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables inositol-polyphosphate 5-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphatidylinositol dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    type I inositol polyphosphate 5-phosphatase 10
    Names
    OSJNBa0085D07.24-1
    Os01g0814200
    P0432B10.25
    inositol-1, 4, 5-trisphosphate 5-phosphatase-like protein
    putative inositol-1, 4, 5-trisphosphate 5-phosphatase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      35236424..35242241 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066304888.1 → XP_066160985.1  type I inositol polyphosphate 5-phosphatase 10 isoform X2

      UniProtKB/TrEMBL
      A0A8J8XLR9, B9ETV4, Q8RZK4

    2. XM_015766954.3 → XP_015622440.1  type I inositol polyphosphate 5-phosphatase 10 isoform X1

      UniProtKB/TrEMBL
      A0A8J8XLR9, B9ETV4, Q8RZK4
      Conserved Domains (1) summary
      cl00490
      Location:75 → 527
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    3. XM_015766965.3 → XP_015622451.1  type I inositol polyphosphate 5-phosphatase 10 isoform X2

      UniProtKB/TrEMBL
      A0A8J8XLR9, B9ETV4, Q8RZK4
      Conserved Domains (1) summary
      cl00490
      Location:74 → 526
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    4. XM_015766946.3 → XP_015622432.1  type I inositol polyphosphate 5-phosphatase 10 isoform X1

      UniProtKB/TrEMBL
      A0A8J8XLR9, B9ETV4, Q8RZK4
      Conserved Domains (1) summary
      cl00490
      Location:75 → 527
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    RNA

    1. XR_010737085.1 RNA Sequence

    2. XR_010737082.1 RNA Sequence

    3. XR_001542722.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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