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    LOC4341259 berberine bridge enzyme-like Cyn d 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341259, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341259
    Gene description
    berberine bridge enzyme-like Cyn d 4
    Locus tag
    OSNPB_060549600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4341259 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (21666141..21668029, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (20808189..20810053, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357025 Neighboring gene small nucleolar RNA R71 Neighboring gene berberine bridge enzyme-like Cyn d 4 Neighboring gene berberine bridge enzyme-like Cyn d 4 Neighboring gene uncharacterized LOC9271874

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables FAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    berberine bridge enzyme-like Cyn d 4
    Names
    Os06g0549600
    P0659D09.11
    berberine bridge enzyme-like 28
    putative CPRD2
    tetrahydrocannabinolic acid synthase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      21666141..21668029 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786270.3 → XP_015641756.1  berberine bridge enzyme-like Cyn d 4

      UniProtKB/TrEMBL
      A0A0P0WXT8, A3BCK9, Q5Z957
      Conserved Domains (3) summary
      COG0277
      Location:73 → 255
      GlcD; FAD/FMN-containing dehydrogenase [Energy production and conversion]
      pfam01565
      Location:77 → 216
      FAD_binding_4; FAD binding domain
      pfam08031
      Location:460 → 520
      BBE; Berberine and berberine like
    Nucleotide Protein
    Heading Accession and Version

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