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    LOC4352615 diacylglycerol kinase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352615, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC4352615
    Gene description
    diacylglycerol kinase 1
    Locus tag
    OSNPB_120576900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4352615 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (24534196..24539818, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (23823827..23829520, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene probable inactive purple acid phosphatase 1 Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene microtubule-destabilizing protein 60 Neighboring gene uncharacterized LOC9271153

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phospholipase C/diacylglycerol kinase-mediated signalling is required for benzothiadiazole-induced oxidative burst and hypersensitive cell death in rice suspension-cultured cells. Chen J, et al. Protoplasma, 2007. PMID 17111096
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. PLC/DGK-mediated signalling plays an important role in Benzothiadiazole-induced oxidative burst, hypersensitive response, and activation of defence response in rice.
      Title: Phospholipase C/diacylglycerol kinase-mediated signalling is required for benzothiadiazole-induced oxidative burst and hypersensitive cell death in rice suspension-cultured cells.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP-dependent diacylglycerol kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    diacylglycerol kinase 1
    Names
    Os12g0576900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      24534196..24539818 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762707.3 → XP_015618193.1  diacylglycerol kinase 1 isoform X2

      UniProtKB/TrEMBL
      B9GDX4, Q0IMD5, Q2QN70
      Conserved Domains (4) summary
      smart00046
      Location:351 → 477
      DAGKc; Diacylglycerol kinase catalytic domain (presumed)
      pfam00609
      Location:496 → 641
      DAGK_acc; Diacylglycerol kinase accessory domain
      cd00029
      Location:75 → 129
      C1; protein kinase C conserved region 1 (C1 domain) superfamily
      cd20805
      Location:142 → 207
      C1_DGK_rpt2; second protein kinase C conserved region 1 (C1 domain) found in the diacylglycerol kinase family

    2. XM_015762706.3 → XP_015618192.1  diacylglycerol kinase 1 isoform X1

      UniProtKB/TrEMBL
      B9GDX4, Q2QN71
      Conserved Domains (4) summary
      smart00046
      Location:351 → 477
      DAGKc; Diacylglycerol kinase catalytic domain (presumed)
      pfam00609
      Location:496 → 652
      DAGK_acc; Diacylglycerol kinase accessory domain
      cd00029
      Location:75 → 129
      C1; protein kinase C conserved region 1 (C1 domain) superfamily
      cd20805
      Location:142 → 207
      C1_DGK_rpt2; second protein kinase C conserved region 1 (C1 domain) found in the diacylglycerol kinase family
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials