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    LOC4335173 F-box/FBD/LRR-repeat protein At1g13570 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335173, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4335173
    Gene description
    F-box/FBD/LRR-repeat protein At1g13570
    Locus tag
    OSNPB_040208600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4335173 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (7368818..7370955, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (7265180..7267326, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene putative FBD-associated F-box protein At5g53635 Neighboring gene F-box/LRR-repeat protein At3g26922 Neighboring gene ABC transporter C family member 14 Neighboring gene ABC transporter C family member 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box/FBD/LRR-repeat protein At1g13570
    Names
    F-box and FBD domain-containing protein
    Os04g0208600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      7368818..7370955 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015779703.3 → XP_015635189.1  F-box/FBD/LRR-repeat protein At1g13570

      UniProtKB/TrEMBL
      A0A0P0W7M4, A3AR43, Q0JES4, Q7XWF0
      Conserved Domains (3) summary
      sd00032
      Location:205 → 229
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:67 → 108
      F-box; F-box domain
      pfam08387
      Location:404 → 449
      FBD
    Nucleotide Protein
    Heading Accession and Version

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