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    LOC4330637 endoglucanase 6-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330637, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4330637
    Gene description
    endoglucanase 6-like
    Locus tag
    OSNPB_020733300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsCel9E
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    Genomic context

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    See LOC4330637 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (31068324..31072137)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (30573382..30577267)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278228 Neighboring gene uncharacterized LOC9268447 Neighboring gene uncharacterized protein At3g17950 Neighboring gene probable calcium-binding protein CML20 Neighboring gene uncharacterized LOC4330640 Neighboring gene probable calcium-binding protein CML20

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    endoglucanase 6
    Names
    Endo-1,4-beta glucanase 6
    LOC_Os02g50040
    P0643A10.32
    putative endo-1,4-beta-glucanase
    NP_001403800.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416871.1 → NP_001403800.1  endoglucanase 6 precursor

      Status: VALIDATED

      Source sequence(s)
      AK101108, CI092442, CI367731, CI606474
      UniProtKB/Swiss-Prot
      A0A0N7KG18, Q0DXU1, Q6Z2J3
      UniProtKB/TrEMBL
      A3AB30

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      31068324..31072137
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6Z2J3.1 GenPept UniProtKB/Swiss-Prot:Q6Z2J3

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