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    LOC4342650 putative F-box protein At1g32420 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342650, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4342650
    Gene description
    putative F-box protein At1g32420
    Locus tag
    OSNPB_070196300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1715_A07.31
    Expression
    Biased expression in mature seeds (RPKM 52.7), milk grains (RPKM 10.7) and 2 other tissues See more
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    Genomic context

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    See LOC4342650 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (5280754..5288033)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (5219444..5226717)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357227 Neighboring gene NAD(P)H-quinone oxidoreductase subunit S, chloroplastic Neighboring gene putative F-box protein At1g50870 Neighboring gene uncharacterized LOC136357262 Neighboring gene hexokinase-4, chloroplastic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative F-box protein At1g32420
    Names
    F-box domain-containing protein
    F-box protein CPR30
    Os07g0196300
    P0589E08.14

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      5280754..5288033
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789707.3 → XP_015645193.1  putative F-box protein At1g32420

      UniProtKB/TrEMBL
      A2YJ50, A3BHI2, Q6ZDP9
      Conserved Domains (2) summary
      smart00256
      Location:24 → 60
      FBOX; A Receptor for Ubiquitination Targets
      cl23987
      Location:123 → 374
      FBA_1; F-box associated

    2. XM_015789708.3 → XP_015645194.1  putative F-box protein At1g32420

      UniProtKB/TrEMBL
      A2YJ50, A3BHI2, Q6ZDP9
      Conserved Domains (2) summary
      smart00256
      Location:24 → 60
      FBOX; A Receptor for Ubiquitination Targets
      cl23987
      Location:123 → 374
      FBA_1; F-box associated

    RNA

    1. XR_010742425.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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