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    LOC4325232 dual specificity protein phosphatase 1B [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325232, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4325232
    Gene description
    dual specificity protein phosphatase 1B
    Locus tag
    OSNPB_010390900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1460_H08.5
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    Genomic context

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    See LOC4325232 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (16576549..16583608, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (16511579..16518699, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene tRNA (guanine(37)-N1)-methyltransferase 1 Neighboring gene pentatricopeptide repeat-containing protein At5g19020, mitochondrial Neighboring gene uncharacterized LOC136354206 Neighboring gene uncharacterized LOC4325233

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables MAP kinase tyrosine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables MAP kinase tyrosine/serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein tyrosine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of MAPK cascade IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dual specificity protein phosphatase 1B
    Names
    Os01g0390900
    putative DsPTP1 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      16576549..16583608 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759888.3 → XP_015615374.1  dual specificity protein phosphatase 1B

      UniProtKB/TrEMBL
      A0A0P0V355, B8A8K6, B9EX23, Q5VNG7
      Conserved Domains (1) summary
      cd14498
      Location:47 → 180
      DSP; dual-specificity phosphatase domain
    Nucleotide Protein
    Heading Accession and Version

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