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    LOC4326400 AP3-complex subunit beta-A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326400, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326400
    Gene description
    AP3-complex subunit beta-A
    Locus tag
    OSNPB_010973300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4326400 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (43623048..43629550)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (42970336..42976882)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein neprosin Neighboring gene kinetochore protein SPC25 homolog Neighboring gene uncharacterized LOC4326401 Neighboring gene receptor-like cytoplasmic kinase 176

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of AP-3 adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP3-complex subunit beta-A
    Names
    Os01g0973300
    P0518C01.41
    P0698H10.15
    putative adaptor-related protein complex AP-3, beta 2 subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      43623048..43629550
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759461.3 → XP_015614947.1  AP3-complex subunit beta-A isoform X1

      UniProtKB/TrEMBL
      A2WZL8
      Conserved Domains (3) summary
      pfam01602
      Location:41 → 616
      Adaptin_N; Adaptin N terminal region
      pfam14796
      Location:797 → 875
      AP3B1_C; Clathrin-adaptor complex-3 beta-1 subunit C-terminal
      sd00044
      Location:66 → 90
      HEAT; HEAT repeat [structural motif]

    2. XM_015759471.3 → XP_015614957.1  AP3-complex subunit beta-A isoform X2

      UniProtKB/TrEMBL
      A2WZL8, Q5JM89, Q5JMD3
      Conserved Domains (3) summary
      pfam01602
      Location:41 → 613
      Adaptin_N; Adaptin N terminal region
      pfam14796
      Location:794 → 872
      AP3B1_C; Clathrin-adaptor complex-3 beta-1 subunit C-terminal
      sd00044
      Location:66 → 90
      HEAT; HEAT repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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